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MHC-I processing predictions

This version of the MHC I processing tool has been retired. Please click here to access the current version.

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Prediction Method Version
Prediction Method Version	2009-09-01
Specify Sequence(s)
Enter protein sequence(s) (Browse for sequences in NCBI)
Or select file containing sequence(s)
Choose sequence format	auto detect format Space separated sequences One sequence (ignores spaces) FASTA format
MHC binding predictions
Prediction Method	IEDB recommended netmhcpan ann smmpmbec smm comblib_sidney2008 arb Help on prediction method selections
MHC source species	chimpanzee cow gorilla human macaque mouse pig
Show only frequently occuring alleles: Select MHC allele(s) (Specify MHC allele sequence)	Allele Length H-2 Db H-2 Dd H-2 Kb H-2 Kd H-2 Kk H-2 Ld HLA A*0101 HLA A*0201 HLA A*0202 HLA A*0203 HLA A*0206 HLA A*0211 HLA A*0212 HLA A*0216 HLA A*0219 HLA A*0250 HLA A*0301 HLA A*1101 HLA A*2301 HLA A*2402 HLA A*2403 HLA A*2501 HLA A*2601 HLA A*2602 HLA A*2603 HLA A*2902 HLA A*3001 HLA A*3002 HLA A*3101 HLA A*3201 HLA A*3301 HLA A*6801 HLA A*6802 HLA A*6901 HLA A*8001 HLA B*0702 HLA B*0801 HLA B*0802 HLA B*0803 HLA B*1501 HLA B*1502 HLA B*1503 HLA B*1509 HLA B*1517 HLA B*1801 HLA B*2705 HLA B*3501 HLA B*3801 HLA B*3901 HLA B*4001 HLA B*4002 HLA B*4402 HLA B*4403 HLA B*4501 HLA B*4601 HLA B*4801 HLA B*5101 HLA B*5301 HLA B*5401 HLA B*5701 HLA B*5801 HLA B*5802 HLA B*7301 Mamu A*01 Mamu A*02 Mamu A*11 Mamu A*2201 Mamu A*2601 Mamu B*01 Mamu B*03 Mamu B*08 Mamu B*17 Mamu B*48 Mamu B*52 Patr A*0101 Patr A*0301 Patr A*0401 Patr A*0701 Patr A*0901 Patr B*0101 Patr B*1301 Patr B*2401 8 9 10 11 12 Upload allele file Paste a single full length MHC protein sequnce in FASTA format: Peptide length: 8 9 10 11
Proteasomal cleavage prediction
Specify proteasome type	immuno constitutive
TAP transport predictions
Maximum precursor extension
Alpha factor
Specify Output
Sort peptides by	Position in sequence Proteasome score TAP score MHC score Processing score Total score
Show	All predictions Proteasome score better than TAP score better than MHC score better than Processing score better than Total score better than cutoff Help on scores
Output format	XHTML table Text file