IEDB Analysis Resource

MHCI Weekly Benchmark results


Overall scores

Overall scores based on data sets submitted to the IEDB within a single week. The overall scores in the SRCC and AUC columns are calculated using performance values for only SRCC or AUC respectively. In the overall column, both evaluation types are used.

Datasets displayed in gray showed poor performance across all of the available predictors and are excluded from the overall ranking, pending further analysis.


Server Overall SRCC AUC
ANN 3.4 66 65 67
ANN 4.0 38 38 38
ARB 56 56 56
DeepSeqPa - - -
IEDB Consensus 44 43 43
NetMHCcons 80 79 81
NetMHCpan 2.8 73 72 74
NetMHCpan 3.0 65 68 62
NetMHCpan 4.0 82 81 83
NetMHCpan 4.1 - - -
PickPocket 64 64 64
SMM 47 45 49
SMMPMBEC 46 43 49
mhcflurry 1.2.0 0 0 0

Data set specific results

Detailed information for the evaluated data sets used in the calculation of the overall scores in the table above. Predictions from each participating server for the data sets listed below may be downloaded here.

IEDB
Reference		 Allele Peptide
Length		 Peptide
Count		 Positive
Count		 Measurement
type		 ANN 3.4 ANN 4.0 ARB DeepSeqPa IEDB Consensus NetMHCcons NetMHCpan 2.8 NetMHCpan 3.0 NetMHCpan 4.0 NetMHCpan 4.1 PickPocket SMM SMMPMBEC mhcflurry 1.2.0
SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC
 1036593   HLA-A*02:01   9   14   9   binary   0.425   0.756   0.388   0.733   0.499   0.800   -   -   0.426   0.756   0.499   0.800   0.573   0.844   0.462   0.778   0.499   0.800   -   -   0.592   0.856   0.426   0.756   0.425   0.756   -0.573   0.156 
 1036593   HLA-A*03:01   10   10   7   binary   0.478   0.786   0.359   0.714   0.717   0.929   -   -   0.418   0.750   0.657   0.893   0.478   0.786   0.478   0.786   0.570   0.857   -   -   0.717   0.929   0.478   0.786   0.418   0.750   -0.538   0.179 
 1036593   HLA-A*11:01   10   11   6   binary   0.693   0.900   0.635   0.867   0.693   0.900   -   -   0.635   0.867   0.751   0.933   0.751   0.933   0.751   0.933   0.751   0.933   -   -   0.577   0.833   0.608   0.867   0.635   0.867   -0.520   0.200 
 1036593   HLA-B*07:02   9   19   9   binary   0.616   0.856   0.577   0.833   0.539   0.811   -   -   0.558   0.822   0.558   0.822   0.558   0.822   0.481   0.778   0.558   0.822   -   -   0.616   0.856   0.577   0.833   0.597   0.844   -0.462   0.233 
 1036593   HLA-B*08:01   9   12   8   binary   0.666   0.906   0.563   0.844   0.256   0.656   -   -   0.513   0.812   0.717   0.938   0.615   0.875   0.768   0.969   0.768   0.969   -   -   0.256   0.656   0.410   0.750   0.512   0.812   -   -