IEDB Analysis Resource

MHC II Automated Server Benchmarks


Accumulated overall ranking scores

Ranking scores based on data sets submitted to the IEDB for the last at least 5 references.

Server 2019-03-22 2018-11-23 2017-12-29 2017-11-24 2017-08-18 2017-06-30 2017-04-28 2017-04-11 2016-12-31
NetMHCIIpan-3.1 83 79 76 72 68 66 83 - -
Consensus IEDB method 65 65 63 64 63 63 50 50 51
NN-align 57 64 66 65 68 63 72 72 65
SMM-align 55 42 38 45 46 36 43 46 46
Tepitope (Sturniolo) 18 41 45 45 43 60 15 17 25
Comblib matrices 10 4 0 0 0 0 13 6 15


Weekly ranking scores

Ranking scores based on data sets submitted to the IEDB within a single week.

Server 2019-03-22 2018-11-23 2017-12-29 2017-11-24 2017-08-18 2017-06-30 2017-04-28 2017-04-11 2016-12-31
NetMHCIIpan-3.1 83 90 67 100 75 75 25 56 -
Consensus IEDB method 57 90 83 50 75 60 100 56 51
NN-align 53 60 67 40 75 69 50 50 65
SMM-align 53 40 0 90 100 26 75 50 46
Tepitope (Sturniolo) 15 10 - 60 0 52 - 100 25
Comblib matrices - 20 - 0 - 0 - 0 15


Download initial benchmark datasets

Click here to download the initial benchmark datasets.