IEDB Analysis Resource

MHC II Automated Server Benchmarks


Accumulated overall ranking scores

Ranking scores based on data sets submitted to the IEDB for the last at least 5 references.

Server 2018-11-23 2017-12-29 2017-11-24 2017-08-18 2017-06-30 2017-04-28 2017-04-11 2016-12-31
NN-align 64 66 65 68 63 72 72 65
NetMHCIIpan-3.1 79 76 72 68 66 83 - -
Comblib matrices 4 0 0 0 0 13 6 15
SMM-align 42 38 45 46 36 43 46 46
Tepitope (Sturniolo) 41 45 45 43 60 15 17 25
Consensus IEDB method 65 63 64 63 63 50 50 51


Weekly ranking scores

Ranking scores based on data sets submitted to the IEDB within a single week.

Server 2018-11-23 2017-12-29 2017-11-24 2017-08-18 2017-06-30 2017-04-28 2017-04-11 2016-12-31
NN-align 60 67 40 75 69 50 50 65
NetMHCIIpan-3.1 90 67 100 75 75 25 56 -
Comblib matrices 20 - 0 - 0 - 0 15
SMM-align 40 0 90 100 26 75 50 46
Tepitope (Sturniolo) 10 - 60 0 52 - 100 25
Consensus IEDB method 90 83 50 75 60 100 56 51


Download initial benchmark datasets

Click here to download the initial benchmark datasets.