core peptide core_start core_end chain pdb allele antigen resolution PFPQPELPY LQPFPQPELPY 3 11 C 1S9V DQB1*0201 gliadin 2.22A EALYLVCGE LVEALYLVCGERGG 3 11 C 1JK8 DQB1*0302 2.4A LPSTKVSWA EGRDSMNLPSTKVSWAAVGGGGSLVPRGSGGGG 3 11 C 1UVQ DQB1*0602 hypocretin 1.8A MRMATPLLM PVSKMRMATPLLMQA 91 99 C 1A6A DRB1*0301 clip 2.75A FKGEQGPKG AGFKGEQGPKGEPG 1001 1009 E 2FSE DRB1*0101 human type II collagen 3.10A IGILNAAKV GELIGILNAAKVPAD 26 34 C 1KLG DRB1*0101 triosephosphate isomerase 2.4A VIPMFSALS PEVIPMFSALSEGATP 36 44 C 1SJE DRB1*0101 hiv capsid 2.45A WRFLRGYHQ GSDWRFLRGYHQYA 5 13 C 1AQD DRB1*0101 2.45A YSDQATPLL AAYSDQATPLLLSPR 2 10 C 1T5W DRB1*0101 MIG1 2.4A YVKQNTLKL PKYVKQNTLKLAT 308 316 C 2G9H DRB1*0101 2.0A MRADAAAGG AYMRADAAAGGA 1170 1178 E 2SEB DRB1*0401 Human collagen II 2.5A YVKQNTLKL PKYVKQNTLKLAT 308 316 C 1J8H DRB1*0401 2.4A VHFFKNIVT ENPVVHFFKNIVTPR 89 97 C 1BX2 DRB1*1501 mbp 2.6A FKNIVTPRT NPVVHFFKNIVTPRTPPPSQ 92 100 C 1FV1 DRB5*0101 MBP shifted binding of MBP compare to DR2b (DRB1*1501) 1.9A YHFVKKHVH GGVYHFVKKHVHES 631 639 C 1H15 DRB5*0101 EB virus DNA plymerase 3.1A AQKAKANKA FEAQKAKANKAVDGGGG 3 11 B 1LNU IAB 2.5A MRMATPLLM GSHSRGLPKPPKPVSKMRMATPLLMQALPMGSGSGS 91 99 C 1MUJ IAB clip 2.15A SQAVHAAHA RGISQAVHAAHAEI 324 332 B 1IAO IAD ovabumin 2.6A TQGVTAASS GHATQGVTAASSHE 128 136 B 2IAD IAD influenza hemagglutinin 2.4A IAPVFVLLE YEIAPVFVLLEYVT 209 217 B 1ES0 IAG7 GAD 2.6A RHGLDNYRG AMKRHGLDNYRGYS 14 22 P 1F3J IAG7 lysozyme 3.1A DYGILQINS STDYGILQINSRW 52 60 P 1IAK IAK 1.9A HRGAIEWEG GNSHRGAIEWEGIESG 134 142 P 1D9K IAK CONALBUMIN 3.2A GGASQYRPS HSRGGASQYRPSQRHGTGSGSGS -1 7 P 1K2D IAU "MBP nature pepetide low affinity, structure with mutation, peptide require PT modification to bind ()" 2.2A IAYLKQASA ADLIAYLKQASAKGG 5 13 B 1KTD IEK pigeon cytochrome c 2.4A IAYLKQATK ADLIAYLKQATKGGG 5 14 B 1KT2 IEK moth cytochrome c 2.8A IAYPKAATK ADLIAYPKAATKF 5 13 E 1R5V IEK artificial 2.5A ITAFNDGLK KKVITAFNDGLKGGG 1 9 B 1FNE IEK HB 1.9A ITAFNEGLK KKVITAFNEGLKGGG 5 13 B 1I3R IEK HB 2.4A