NetChop:
M. Nielsen, C. Lundegaard, O. Lund, and C. Kesmir. 2005. The role of the proteasome in
generating cytotoxic T cell epitopes: Insights obtained from improved predictions of proteasomal
cleavage.
Immunogenetics. 57:33-41.
[PMID: 15744535]
P. Saxova, S. Buus, S. Brunak, and C. Kesmir. 2003. Predicting proteasomal cleavage sites: a
comparison of available methods.
Int Immunol. 15 :781-7.
[PMID: 12807816]
C. Kesmir, A. Nussbaum, Hansjorg Schild, Vincent Detours, and S. Brunak. 2002. Prediction of
proteasome cleavage motifs by neural networks.
Prot. Eng. 15(4):287-296.
[PMID: 11983929]
NetCTL:
Larsen M.V., Lundegaard C., Lamberth K., Buus S., Lund O., and Nielsen M. 2007. Large-Scale
validation of methods for cytotoxic T-lymphocyte epitope prediction.
BMC Bioinformatics 8:424.
[PMID: 17973982]
Larsen M.V., Lundegaard C., Kasper Lamberth, Buus S,. Brunak S., Lund O., and Nielsen M.
2005. An integrative approach to CTL epitope prediction: A combined algorithm integrating
MHC-I binding, TAP transport efficiency, and proteasomal cleavage predictions.
European Journal of Immunology 35(8):2295-303.
[PMID: 15997466]
NetCTLpan:
Stranzl T., Larsen M.V., Lundegaard C., Nielsen M. NetCTLpan: pan-specific MHC class I pathway
epitope predictions.
Immunogenetics 62(6):357-68.
[PMID: 11983929]