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NetChop/NetCTL/NetCTLpan

Choose a Prediction Method
Prediction Method	NetCHOP NetCTL NetCTLpan
Specify Sequence(s)
Enter protein equence(s) in FASTA format
Or select file containing sequence(s)
Method Specific Options
Method	C term 3.0 20S 3.0
Threshold
Weight on C terminal cleavage:
Weight on TAP transport efficiency:
Select Supertype:	A1 supertype A2 supertype A3 supertype A24 supertype A26 supertype B7 supertype B8 supertype B27 supertype B39 supertype B44 supertype B58 supertype B62 supertype
Threshold:
Sort by score:	No sort Combined score MHC Cleavage TAP
Species: Species...	chimpanzee gorilla human macaque mouse pig
Show only frequently occuring alleles: Select allele	Allele Length HLA-A*01:01 HLA-A*02:01 HLA-A*03:01 8 9 10 11
Threshold for showing predictions: Threshold for showing predictions is the low combined prediction score threshold to filter with predictions to display.
Weight on C terminal cleavage: Relative weight on proteasomal cleavage.
Weight on TAP transport efficiency: Relative weight on TAP transport efficiency predicted using weight matrix based method describe by Peters et al., 2003.
Threshold for epitope identification: Threshold for epitope identification is the threshold to label predictions a epitopes. This threshold is based on the %rank score.
Percentile for positive prediction: Percentile cutoff value for positive prediction.	%