IEDB Analysis Resource
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NetChop/NetCTL/NetCTLpan
Choose a Prediction Method
Prediction Method
NetCHOP
NetCTL
NetCTLpan
Specify Sequence(s)
Enter protein equence(s) in FASTA format
>BHB191648|gi:90572034|gb:CY010133|UniProtKB:Q1WPY8|Gene Symbol:M2|Protein Name:Matrix protein 2|Organism:Influenza A Virus A/Canterbury/100/2000|Segment:7|Subtype:H1N1|Host:Human MSLLTEVETPIRNEWGCRCNDSSDPLVVAASIIGIVHLILWIIDRLFSKSIYRIFKHGLKRGPSTEGVPESMREEYREEQQNAVDADDGHFVSIELE >BHB191653|gi:90572040|gb:CY010136|UniProtKB:Q1WPY3|Gene Symbol:NS1|Protein Name:Nonstructural protein 1|Organism:Influenza A Virus A/Canterbury/100/2000|Segment:8|Subtype:H1N1|Host:Human MDSHTVSSFQVDCFLWHVRKQVADQDLGDAPFLDRLRRDQKSLKGRGSTLGLNIETATCVGKQIVERILKEESDEAFKMTMASALASRYLTDMTIEEMSRDWFMLMPKQKVAGPLCVRMDQAIMDKNIILKANFSVIFDRLENLTLLRAFTEEGAIVGEISPLPSLPGHTNEDVKNAIGVLIGGLEWNDNTVRVSETLQRFTWRSSNETGGPPFTPTQKRKMAGTIRSEV >BHB191652|gi:90572041|gb:CY010136|UniProtKB:Q1WPY4|Gene Symbol:NS2|Protein Name:Nonstructural protein 2|Organism:Influenza A Virus A/Canterbury/100/2000|Segment:8|Subtype:H1N1|Host:Human MDSHTVSSFQDILMRMSKMQLGSSSGDLNGMITQFESLKLYRDSLGEAVMRLGDLHSLQHRNGKWREQLGQKFEEIRWLIEEVRHKLKTTENSFEQITFMQALQLLFEVEQEIRTFSFQLI
Or select file containing sequence(s)
Method Specific Options
Method
C term 3.0
20S 3.0
Threshold
Weight on C terminal cleavage:
Weight on TAP transport efficiency:
Select Supertype:
A1 supertype
A2 supertype
A3 supertype
A24 supertype
A26 supertype
B7 supertype
B8 supertype
B27 supertype
B39 supertype
B44 supertype
B58 supertype
B62 supertype
Threshold:
Sort by score:
No sort
Combined score
MHC
Cleavage
TAP
Species:
chimpanzee
gorilla
human
macaque
mouse
pig
Show only frequently occuring alleles:
Select allele
Allele
Length
HLA-A*01:01
HLA-A*02:01
HLA-A*03:01
8
9
10
11
Threshold for showing predictions:
Threshold for showing predictions is the low combined prediction score threshold to filter with predictions to display.
Weight on C terminal cleavage:
Relative weight on proteasomal cleavage.
Weight on TAP transport efficiency:
Relative weight on TAP transport efficiency predicted using weight matrix based method describe by Peters
et al.
, 2003.
Threshold for epitope identification:
Threshold for epitope identification is the threshold to label predictions a epitopes. This threshold is based on the %rank score.
Percentile for positive prediction:
Percentile cutoff value for positive prediction.
%
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references
when using these tools.