MHC-II binding dataset - Download

This MHC class II binding affinity dataset consists of 44, 541 experimentally measured binging affinities covering 26 alleric variants.

Two sets of randomly splitted 5-fold cross validation data are provided: the entire dataset ("ALL") and the similarity reduced dataset ("SR").

To download the dataset in tar.gz format:

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Prediction scores for MHC-II binding dataset - Download

The prediction scores for the six implemented algorithms based on above dataset can be download here. The scores were generate via 5-fold cross validation based on two sets of data: the entire dataset ("ALL") and the similarity reduced dataset "SR".

To download the scores in tar.gz format:

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Combinatorial peptide scanning library scoring matrices - Download

This file contains the scoring matrices for sixteen MHC class II alleles developed from the combinatorial peptide scanning library data.

To download the dataset in tar.gz format:

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MHC-II binding predictions - Download

The MHC_II binding tool contains a collection of following peptide binding prediction methods

• arb
• combinatorial library
• smm_align
• tepitope
• Consensus
• NetMHCIIpan

for Major Histocompatibility Complex (MHC) class II molecules.The collection is a mixture of pythons scripts and linux 32-bit environment specific binaries.

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To download the tools in tar.gz format: To download the tools as a Debian package: To install to a machine running Ubuntu Linux 8.04 or later via the package management system, please follow these steps: Add the following line to your '/etc/apt/sources.list' file: deb http://tiara.liai.org/apt hardy contrib Open the terminal and issue the following command: $ sudo apt-get update && sudo apt-get install iedbtools-mhc-ii To return to the main page: